Similar HOG based on pairwise relations to

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

HOG:E0789775 with 9 members (kinase anchoring protein)

Metazoa / Eumetazoa / Bilateria / Protostomia / Ecdysozoa / Panarthropoda / Arthropoda /

... /

Arachnida / Acari / Parasitiformes /

Ixodidae /

Completeness score: 1.00

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This HOG has 23 similar HOGs:

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Rank	HOG ID	Shared orthologs	HOG size	Description
1	HOG:E0789775.5b.3a	656	105	kinase anchoring protein
2	HOG:E0789775	507	237	kinase anchoring protein
3	HOG:E0789775.5b	329	161	kinase anchoring protein
4	HOG:E0789775.5b.3a.3b	42	6	kinase anchoring protein
5	HOG:E0789775.5b.2b	24	3	kinase anchoring protein
6	HOG:E0789775.5b.2a	16	2	kinase anchoring protein
7	HOG:E0789775.1b	15	2	kinase anchoring protein
8	HOG:E0789775.5b.1b	13	4	kinase anchoring protein
9	HOG:E0789775.5b.3b	8	1	kinase anchoring protein
10	HOG:E0789775.5b.3a.3c	8	1	kinase anchoring protein
11	HOG:E0789775.5b.3a.3a	8	1	kinase anchoring protein
12	HOG:E0789775.4b	8	1	kinase anchoring protein
13	HOG:E0789775.4a	8	1	kinase anchoring protein
14	HOG:E0677497	8	2	-
15	HOG:E0672476	8	2	-
16	HOG:E0789775.5b.3a.2b	7	1	kinase anchoring protein
17	HOG:E0789775.5b.3a.2a	7	1	kinase anchoring protein
18	HOG:E0789775.5b.1b.1b	7	1	kinase anchoring protein
19	HOG:E0789775.5b.1b.1a	7	1	kinase anchoring protein
20	HOG:E0789775.5b.1a	7	1	kinase anchoring protein
21	HOG:E0789775.1a	7	1	kinase anchoring protein
22	HOG:E0789775.5a	1	1	kinase anchoring protein
23	HOG:E0728522	1	2	kinase anchoring protein

Showing 1 to 23 of 23 rows rows per page